Bioinformatics-Tools

Collection of Tools and Algorithms in Bioinformatics

• Equations/Algorithms
  • Likelihood-Ratio Test
  • Genetic Algorithm Implementation for Optimizing Component Selection
  • Pseudo-Random Number Generator using Linear Feedback Shift Register (LFSR)
  • Quantum Mechanics Calculation for Infinite Potential Well
• Tools
  • Get Amino Acid from Consensus File
  • Plot Conservation from Multiple Conservation Files in Box Plot
• Sequence Alignment
  • Global Alignment using Dynamic Programming
  • Global Alignment in Linear Space using Divide and Conquer (Hirschberg’s Algorithm)
  • Local Alignment in Linear Space using Divide and Conquer
  • Block Alignment using Divide and Conquer (Look Up Table)
• Clustering
  • Hierarchical Agglomerative Clustering using Single-Linkage Method
• Data Mining
  • Data Mining using NLTK (Natural Language Toolkit) for Proteomics
• Machine Learning
  • Determination of the Starting Exon using Markov Model